PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g075250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 426aa    MW: 47763.4 Da    PI: 5.0692
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g075250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.71.6e-95314222373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPil 91 
                     ++lLl+cA+a++s+d++laq++++ l++laspdgd++qRla+ f++AL +r a++ ++ +  l++  t+ +    + +++++ +l  f++++P++
  Csa02g075250.1  31 EQLLLHCANAIESNDATLAQQIIWVLNNLASPDGDSTQRLASSFLRALMSRAASKIPSFA-FLSVAGTAASVsrkTLHRFSVIELaqFVDLTPWH 124
                     79****************************************************888765.33444333334112444445555589******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefn 179
                     +f++++aN aIl+aveg + vHi+D+++++++Q p+L++++a++   ++ p l++T+++s +++        ++ee+g++L +fA++ ++ +ef+
  Csa02g075250.1 125 RFGFIAANAAILDAVEGYSSVHIVDLSLTHCMQMPTLIDSMANKLhkQPLPLLKLTVIVSDDEShppplLGISYEELGSKLVNFATTRNIAMEFR 219
                     ******************************************998667778*******9987777888888999********************* PP

            GRAS 180 vl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                     ++   +++ l++l +e+Lr +p   +Eal+Vn++++lh+++de+++++ +r+ +Lk +++l+P++v++++++ad +s+++  r+ +  +y++  +
  Csa02g075250.1 220 IIsssYSDGLSSL-IEQLRNDPfvfNEALVVNCHMMLHYIPDENLTSSPTRSVFLKELRDLNPTIVTLIDEDADFTSTNLISRLRSLYNYMWIPY 313
                     *966555566666.9******************************************************************************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgsl 358
                     d+ ++ l r se+r+++E+  ++++i nv+a+egaer+er e +++W er++ea F  v ++e++a++ak++l++++ ++g++ +    ++ + +
  Csa02g075250.1 314 DTADMFLTRGSEQRQWYEAD-VSWKIDNVIAKEGAERVERLEPKSRWFERMREAKFAGVGFGEEVATEAKTMLEEHAtGWGMKRDvdedDDVERF 407
                     ********************.9*******************************************************999987664433336789 PP

            GRAS 359 vlgWkdrpLvsvSaW 373
                     vl+Wk++++v++SaW
  Csa02g075250.1 408 VLTWKGHSVVFASAW 422
                     9************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.0914398IPR005202Transcription factor GRAS
PfamPF035145.5E-9331422IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MNTTRILNTT RPLWPGFSSS KSICGDANCM EQLLLHCANA IESNDATLAQ QIIWVLNNLA  60
SPDGDSTQRL ASSFLRALMS RAASKIPSFA FLSVAGTAAS VSRKTLHRFS VIELAQFVDL  120
TPWHRFGFIA ANAAILDAVE GYSSVHIVDL SLTHCMQMPT LIDSMANKLH KQPLPLLKLT  180
VIVSDDESHP PPLLGISYEE LGSKLVNFAT TRNIAMEFRI ISSSYSDGLS SLIEQLRNDP  240
FVFNEALVVN CHMMLHYIPD ENLTSSPTRS VFLKELRDLN PTIVTLIDED ADFTSTNLIS  300
RLRSLYNYMW IPYDTADMFL TRGSEQRQWY EADVSWKIDN VIAKEGAERV ERLEPKSRWF  360
ERMREAKFAG VGFGEEVATE AKTMLEEHAT GWGMKRDVDE DDDVERFVLT WKGHSVVFAS  420
AWAPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-19323856340GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076450.0AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464071.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLD7MUQ80.0D7MUQ8_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80021750.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein